Genetic diversity assessment of Trichoderma spp. isolated from various Egyptian locations using its gene sequencing marker, rep-PCR, and their cellulolytic activity

El-Sobky, Muhammad Alaaeldin; Eissa, Ragaa Abedlaziz; Abdel-Lateif, Khalid Salah; Fahmi, Abdelmegid Ibrahim; El-Zanaty, Abdelfattah Mondy; Hassan, Mohamed Mahmoud; Elsharkawy, Mohsen Mohamed

doi:10.1186/s41938-024-00784-6

Egyptian Journal of Biological Pest Control

Table 1 The NCBI BLAST query for Trichoderma isolated from different location in Egypt

From: Genetic diversity assessment of Trichoderma spp. isolated from various Egyptian locations using its gene sequencing marker, rep-PCR, and their cellulolytic activity

Isolates	Species	Query coverage %	Ident %	Accession number
MNF-MAS-Tricho1*	Trichoderma harzianum	100.00	100.00	MH688753
MNF-MAS-Tricho 2*	Hypocrea lixii/Trichoderma harzianum	100.00	99.00	MH688857
MNF-MAS-Tricho 3*	Trichoderma longibrachiatum	100.00	99.00	MH707326
MNF-MAS-Tricho 4*	Trichoderma harzianum	99.00	99.00	MH712434
MNF-MAS-Tricho 5*	Hypocrea lixii/Trichoderma harzianum	100.00	99.00	MH697665
MNF-MAS-Tricho 6*	Trichoderma harzianum	100.00	100.00	MH699073
MNF-MAS-Tricho 7*	Trichoderma asperellum	99.00	100.00	MH688914
GIZ-MAS-Tricho 8¹	Trichoderma sp.	99.00	99.00	OR805522
MNF-MAS-Tricho 9*	Trichoderma harzianum	100.00	99.00	MH702379
MNF-MAS-Tricho 10*	Trichoderma harzianum	99.00	100.00	MH697404
MNF-MAS-Tricho 11*	Hypocrea lixii/Trichoderma harzianum	100.00	100.00	MH697405
MNF-MAS-Tricho 12*	Hypocrea lixii/Trichoderma harzianum	100.00	99.00	MH697536
MNF-MAS-Tricho 13*	Hypocrea lixii/Trichoderma harzianum	99.00	99.00	MH697554
MNF-MAS-Tricho 14*	Trichoderma sp.	99.00	99.00	MH697555
MNF-MAS-Tricho 15*	Trichoderma sp.	100.00	99.00	MH697561
MNF-MAS-Tricho 16	Hypocrea lixii/Trichoderma harzianum	100.00	100.00	MH697561
MNF-MAS-Tricho 17*	Trichoderma harzianum	99.00	100.00	MH697573
MNF-MAS-Tricho 18*	Hypocrea lixii/Trichoderma harzianum	99.00	99.00	MH697572
MNF-MAS-Tricho 19*	Hypocrea lixii/Trichoderma harzianum	100.00	99.00	MH697574
MNF-MAS-Tricho 20*	Trichoderma harzianum	100.00	100.00	MH697684
MNF-MAS-Tricho 21¹	Trichoderma harzianum	99.00	100.00	OR794113
MNF-MAS-Tricho 22¹	Trichoderma harzianum	99.00	99.00	OR794112
MNF-MAS-Tricho 23*	Trichoderma harzianum	100.00	99.00	MH697609
GIZ-MAS-Tricho 24¹	Trichoderma harzianum	100.00	100.00	OR793989
ASI-MAS-Tricho 25¹	Trichoderma harzianum	99.00	100.00	OR793988
ASI-MAS-Tricho 26¹	Trichoderma harzianum	99.00	99.00	OR793967

Whereas, ¹New isolates (Current study), *Old isolates (El-sobky et al. 2019)

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