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Egyptian Journal of Biological Pest Control
Fig. 2 | Egyptian Journal of Biological Pest Control

Fig. 2

From: Molecular characterization and identification of bhendi yellow vein mosaic virus with satellite DNAs infecting okra plants of district Mardan, Pakistan

Fig. 2

Phylogenetic trees of BYVMV (OM1), CroYVMB (OM2) and CLCuMuA (OM3). A Maximum likelihood phylogenetic tree of BYVMV was constructed based on MUSCLE alignment of selected begomovirus sequences from GenBank and sequences obtained here. Cotton leaf crumple virus (AF480940) sequence was used as an outgroup to validate the tree. B Phylogenetic tree of CroYVMB was generated by MUSCLE alignment using related betasatellite sequences from GenBank and sequence obtained here. Cotton leaf curl Multan alphasatellite (KR816012) was taken as outgroup. C Maximum likelihood (ML) phylogenetic tree was constructed based on MUSCLE alignments of CLCuMuA (OM3) with the complete nucleotide sequences of selected alphasatellite genomes available in the databases. The tree was arbitrarily rooted on the sequence of cotton leaf curl Multan betasatellite (HF549188), as outgroup. The numbers at nodes represent percentage bootstrap confidence scores (1000 replicates)

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