Table 4 Homology search (BLAST) results of all sequenced samples
No. | Primer set | Isolate* | No. of bases | E value | Maximum similarity hit |
|---|---|---|---|---|---|
1 | Fs1/Rs1 | Pcc1 | 250 bp | 5e−124** | 93–98% |
2 | Pcc2 | 240 bp | 6e−92** | 94–98% | |
3 | Pcc3 | 240 bp | 7e−110** | 87–92% | |
4 | Pcc4 | 238 bp | 7e−97** | 96–99% | |
5 | Pcc5 | 240 bp | 8e−109** | 90–92% | |
6 | Pcc6 | 210 bp | 4e−30** | 99–100% | |
7 | Pcc7 | 210 bp | 1e−93** | 95–99% | |
8 | Pcc8 | 210 bp | 2e−104** | 98–99% | |
Acc. No. KP187511.1 | Pcc9 | P. carotovorum | 4e−106 | 100% | |
Acc. no. KP405846.1 | Pcc10 | Erwinia carotovorum | 6e−16 | 100% |